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1

Genotype imputation for genome-wide association studies

Marchini, Jonathan, Howie, Bryan

Journal:

Nature Reviews Genetics

Year:

2010

Language:

english

File:

PDF, 800 KB

english, 2010

2

Joint Genotype Calling With Array and Sequence Data

Jared O'Connell, Jonathan Marchini

Journal:

Genetic Epidemiology

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

3

A multiple-phenotype imputation method for genetic studies

Dahl, Andrew, Iotchkova, Valentina, Baud, Amelie, Johansson, Åsa, Gyllensten, Ulf, Soranzo, Nicole, Mott, Richard, Kranis, Andreas, Marchini, Jonathan

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

4

Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics

Wiberg, Akira, Ng, Michael, Al Omran, Yasser, Alfaro-Almagro, Fidel, McCarthy, Paul, Marchini, Jonathan, Bennett, David L, Smith, Stephen, Douaud, Gwenaëlle, Furniss, Dominic

Journal:

Year:

2019

Language:

english

File:

PDF, 844 KB

english, 2019

5

MODELS FOR DIAGNOSING CHEST PAIN: IS CART HELPFUL?

NICOLA J. CRICHTON, JOHN P. HINDE, JONATHAN MARCHINI

Journal:

Statistics in Medicine

Year:

1997

Language:

english

File:

PDF, 226 KB

english, 1997

6

Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array

Niall Cardin, Chris Holmes, The Wellcome Trust Case Control Consortium, Peter Donnelly, Jonathan Marchini

Journal:

Genetic Epidemiology

Year:

2011

Language:

english

File:

PDF, 372 KB

english, 2011

7

Modeling interactions with known risk loci—a Bayesian model averaging approach

Teresa Ferreira, Jonathan Marchini

Journal:

Annals of Human Genetics

Year:

2011

Language:

english

File:

PDF, 276 KB

english, 2011

8

A robust statistical method for case-control association testing with copy number variation

Barnes, Chris, Plagnol, Vincent, Fitzgerald, Tomas, Redon, Richard, Marchini, Jonathan, Clayton, David, Hurles, Matthew E

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 527 KB

english, 2008

9

Reply to "Genomic Control to the extreme"

Marchini, Jonathan, Cardon, Lon R, Phillips, Michael S, Donnelly, Peter

Journal:

Nature Genetics

Year:

2004

Language:

english

File:

PDF, 99 KB

english, 2004

10

The effects of human population structure on large genetic association studies

Cardon, Lon R, Phillips, Michael S, Donnelly, Peter, Marchini, Jonathan

Journal:

Nature Genetics

Year:

2004

Language:

english

File:

PDF, 177 KB

english, 2004

11

Genome-wide strategies for detecting multiple loci that influence complex diseases

Marchini, Jonathan, Donnelly, Peter, Cardon, Lon R

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 284 KB

english, 2005

12

A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC

de Bakker, Paul I W, McVean, Gil, Sabeti, Pardis C, Miretti, Marcos M, Green, Todd, Marchini, Jonathan, Ke, Xiayi, Monsuur, Alienke J, Whittaker, Pamela, Delgado, Marcos

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 1.82 MB

english, 2006

13

A new multipoint method for genome-wide association studies by imputation of genotypes

Marchini, Jonathan, Howie, Bryan, Myers, Simon, McVean, Gil, Donnelly, Peter

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 539 KB

english, 2007

14

Comparing Algorithms for Genotype Imputation

Jonathan Marchini, Bryan Howie

Journal:

The American Journal of Human Genetics

Year:

2008

Language:

english

File:

PDF, 664 KB

english, 2008

15

A Comparison of Phasing Algorithms for Trios and Unrelated Individuals

Jonathan Marchini, David Cutler, Nick Patterson, Matthew Stephens, Eleazar Eskin, Eran Halperin, Shin Lin, Zhaohui S. Qin, Heather M. Munro, Gonçalo R. Abecasis, Peter Donnelly

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 329 KB

english, 2006

16

Improved whole-chromosome phasing for disease and population genetic studies

Delaneau, Olivier, Zagury, Jean-Francois, Marchini, Jonathan

Journal:

Year:

2012

Language:

english

File:

PDF, 247 KB

english, 2012

17

Comparing methods of analyzing fMRI statistical parametric maps

Jonathan Marchini, Anne Presanis

Journal:

Year:

2004

Language:

english

File:

PDF, 319 KB

english, 2004

18

Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes

Zeggini, Eleftheria, Scott, Laura J, Saxena, Richa, Voight, Benjamin F, Marchini, Jonathan L, Hu, Tianle, de Bakker, Paul IW, Abecasis, Gonçalo R, Almgren, Peter, Andersen, Gitte, Ardlie, Kristin, Bos

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 325 KB

english, 2008

19

Multiway Admixture Deconvolution Using Phased or Unphased Ancestral Panels

Churchhouse, Claire, Marchini, Jonathan

Journal:

Genetic Epidemiology

Year:

2013

Language:

english

File:

PDF, 796 KB

english, 2013

20

A New Statistical Approach to Detecting Significant Activation in Functional MRI

Jonathan L. Marchini, Brian D. Ripley

Journal:

Year:

2000

Language:

english

File:

PDF, 547 KB

english, 2000

21

A new statistical approach to detecting significant activation in functional MRI

Jonathan Marchini, Brian Ripley

Journal:

Year:

2000

Language:

english

File:

PDF, 108 KB

english, 2000

22

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

Howie, Bryan, Fuchsberger, Christian, Stephens, Matthew, Marchini, Jonathan, Abecasis, Gonçalo R

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 315 KB

english, 2012

23

Haplotype Estimation Using Sequencing Reads

Delaneau, Olivier, Howie, Bryan, Cox, Anthony J., Zagury, Jean-François, Marchini, Jonathan

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 708 KB

english, 2013

24

A linear complexity phasing method for thousands of genomes

Delaneau, Olivier, Marchini, Jonathan, Zagury, Jean-François

Journal:

Year:

2011

Language:

english

File:

PDF, 662 KB

english, 2011

25

S-Nitrosothiol Signaling Regulates Liver Development and Improves Outcome following Toxic Liver Injury

Cox, Andrew G., Saunders, Diane C., Kelsey, Peter B., Conway, Allie A., Tesmenitsky, Yevgenia, Marchini, Julio F., Brown, Kristin K., Stamler, Jonathan S., Colagiovanni, Dorothy B., Rosenthal, Gary J.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.62 MB

english, 2014

26

On Bias in the Estimation of Autocorrelations for fMRI Voxel Time-Series Analysis

Marchini, Jonathan L., Smith, Stephen M.

Journal:

Year:

2003

Language:

english

File:

PDF, 188 KB

english, 2003

27

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Delaneau, Olivier, Marchini, Jonathan, McVean, Gil A., Donnelly, Peter, Lunter, Gerton, Marchini, Jonathan L., Myers, Simon, Gupta-Hinch, Anjali, Iqbal, Zamin, Mathieson, Iain, Rimmer, Andy, Xifara, D

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 302 KB

english, 2014

28

Discussion on the Meeting on 'Statistical Modelling and Analysis of Genetic Data'

David J. Balding, Andrew D. Carothers, Jonathan L. Marchini, Lon R. Cardon, Atam Vetta, Bob Griffiths, B. S. Weir, W. G. Hill, Darlene Goldstein, Korbinian Strimmer, Simon Myers, Mark A. Beaumont, C.

Journal:

Journal of the Royal Statistical Society: Series B (Statistical Methodology)

Year:

2002

Language:

english

File:

PDF, 6.15 MB

english, 2002

29

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

Spencer, Chris C. A., Su, Zhan, Donnelly, Peter, Marchini, Jonathan, Storey, John D.

Journal:

Year:

2009

Language:

english

File:

PDF, 643 KB

english, 2009

30

Integrated Enrichment Analysis of Variants and Pathways in Genome-Wide Association Studies Indicates Central Role for IL-2 Signaling Genes in Type 1 Diabetes, and Cytokine Signaling Genes in Crohn's Disease

Carbonetto, Peter, Stephens, Matthew, Marchini, Jonathan

Journal:

Year:

2013

Language:

english

File:

PDF, 1005 KB

english, 2013

31

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

Howie, Bryan N., Donnelly, Peter, Marchini, Jonathan, Schork, Nicholas J.

Journal:

Year:

2009

Language:

english

File:

PDF, 895 KB

english, 2009

32

Two-Stage Two-Locus Models in Genome-Wide Association

Evans, David M., Marchini, Jonathan, Morris, Andrew P., Cardon, Lon R.

Journal:

Year:

2006

Language:

english

File:

PDF, 375 KB

english, 2006

33

Identification of a Shared Genetic Susceptibility Locus for Coronary Heart Disease and Periodontitis

Schaefer, Arne S., Richter, Gesa M., Groessner-Schreiber, Birte, Noack, Barbara, Nothnagel, Michael, Mokhtari, Nour-Eddine El, Loos, Bruno G., Jepsen, Søren, Schreiber, Stefan, Marchini, Jonathan

Journal:

Year:

2009

Language:

english

File:

PDF, 206 KB

english, 2009

34

An Evolutionary Framework for Association Testing in Resequencing Studies

King, C. Ryan, Rathouz, Paul J., Nicolae, Dan L., Marchini, Jonathan

Journal:

Year:

2010

Language:

english

File:

PDF, 280 KB

english, 2010

35

Introduction to the Special Issue: Genome-Wide Association Studies

Gang Zheng, Jonathan Marchini and Nancy L. Geller

Journal:

Statistical Science

Year:

2009

Language:

english

File:

PDF, 262 KB

english, 2009

36

Phasing for medical sequencing using rare variants and large haplotype reference panels

Sharp, Kevin, Kretzschmar, Warren, Delaneau, Olivier, Marchini, Jonathan

Journal:

Year:

2016

Language:

english

File:

PDF, 235 KB

english, 2016

37

Intra-individual variation in resting metabolic rate during the menstrual cycle

Henry, C. Jeya K., Lightowler, Helen J., Marchini, Jonathan

Journal:

British Journal Of Nutrition

Year:

2003

Language:

english

File:

PDF, 245 KB

english, 2003

38

Haplotype estimation for biobank-scale data sets

O'Connell, Jared, Sharp, Kevin, Shrine, Nick, Wain, Louise, Hall, Ian, Tobin, Martin, Zagury, Jean-Francois, Delaneau, Olivier, Marchini, Jonathan

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 363 KB

english, 2016

39

Tensor decomposition for multiple-tissue gene expression experiments

Hore, Victoria, Viñuela, Ana, Buil, Alfonso, Knight, Julian, McCarthy, Mark I, Small, Kerrin, Marchini, Jonathan

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 2.58 MB

english, 2016

40

11,670 whole-genome sequences representative of the Han Chinese population from the CONVERGE project

Cai, Na, Bigdeli, Tim B., Kretzschmar, Warren W., Li, Yihan, Liang, Jieqin, Hu, Jingchu, Peterson, Roseann E., Bacanu, Silviu, Webb, Bradley Todd, Riley, Brien, Li, Qibin, Marchini, Jonathan, Mott, Ri

Journal:

Scientific Data

Year:

2017

Language:

english

File:

PDF, 620 KB

english, 2017

41

CERAMIC: Case-Control Association Testing in Samples with Related Individuals, Based on Retrospective Mixed Model Analysis with Adjustment for Covariates

Zhong, Sheng, Jiang, Duo, McPeek, Mary Sara, Marchini, Jonathan

Journal:

Year:

2016

Language:

english

File:

PDF, 3.20 MB

english, 2016

42

Leveraging Identity-by-Descent for Accurate Genotype Inference in Family Sequencing Data

Li, Bingshan, Wei, Qiang, Zhan, Xiaowei, Zhong, Xue, Chen, Wei, Li, Chun, Haines, Jonathan, Marchini, Jonathan

Journal:

Year:

2015

Language:

english

File:

PDF, 2.20 MB

english, 2015

43

Comparison of phasing strategies for whole human genomes

Choi, Yongwook, Chan, Agnes P., Kirkness, Ewen, Telenti, Amalio, Schork, Nicholas J., Marchini, Jonathan

Journal:

Year:

2018

Language:

english

File:

PDF, 5.53 MB

english, 2018

44

An imputation platform to enhance integration of rice genetic resources

Wang, Diane R., Agosto-Pérez, Francisco J., Chebotarov, Dmytro, Shi, Yuxin, Marchini, Jonathan, Fitzgerald, Melissa, McNally, Kenneth L., Alexandrov, Nickolai, McCouch, Susan R.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.70 MB

english, 2018

45

Genome-wide association studies of brain imaging phenotypes in UK Biobank

Elliott, Lloyd T., Sharp, Kevin, Alfaro-Almagro, Fidel, Shi, Sinan, Miller, Karla L., Douaud, Gwenaëlle, Marchini, Jonathan, Smith, Stephen M.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.23 MB

english, 2018

46

Introduction to the Special Issue: Genome-Wide Association Studies

Zheng, Gang, Marchini, Jonathan, Geller, Nancy L.

Journal:

Statistical Science

Year:

2009

Language:

english

File:

PDF, 33 KB

english, 2009

47

Analysis of Complex Disease Association Studies || Genotype Imputation

Marchini, Jonathan

Year:

2011

Language:

english

File:

PDF, 306 KB

english, 2011

48

The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure

Mollink, Jeroen, Smith, Stephen M., Elliott, Lloyd T., Kleinnijenhuis, Michiel, Hiemstra, Marlies, Alfaro-Almagro, Fidel, Marchini, Jonathan, van Cappellen van Walsum, Anne-Marie, Jbabdi, Saad, Miller

Journal:

Nature Neuroscience

Year:

2019

Language:

english

File:

PDF, 4.12 MB

english, 2019

49

A Bayesian Method for Detecting and Characterizing Allelic Heterogeneity and Boosting Signals in Genome-Wide Association Studies

Su, Zhan, Cardin, Niall, Donnelly, Peter, Marchini, Jonathan

Journal:

Statistical Science

Year:

2009

Language:

english

File:

PDF, 3.51 MB

english, 2009

50

Unified single-cell analysis of testis gene regulation and pathology in five mouse strains

Jung, Min, Wells, Daniel, Rusch, Jannette, Ahmad, Suhaira, Marchini, Jonathan, Myers, Simon R, Conrad, Donald F

Journal:

Year:

2019

Language:

english

File:

PDF, 10.92 MB

english, 2019